From 8d0034026d0623bfd8bc86366eb1eab0d6039ad4 Mon Sep 17 00:00:00 2001
From: adamr <adamr@drcmr.dk>
Date: Sat, 27 May 2023 23:17:51 +0200
Subject: [PATCH] defining thresholds added

---
 EStiMo_GUI_0123.py                     | 115 ++++++--------------
 FirstWindow.py                         |  48 +++++++--
 __pycache__/FirstWindow.cpython-38.pyc | Bin 31865 -> 32636 bytes
 logs/TMS_log_2023-05-16-13-41.csv      |  17 +++
 logs/TMS_log_2023-05-25-16-55.csv      |  26 +++++
 logs/TMS_log_2023-05-27-15-23.csv      |   7 ++
 logs/TMS_log_2023-05-27-15-25.csv      |  67 ++++++++++++
 logs/TMS_log_2023-05-27-15-26.csv      |  15 +++
 logs/TMS_log_2023-05-27-15-27.csv      |  13 +++
 logs/TMS_log_2023-05-27-15-30.csv      |  11 ++
 logs/TMS_log_2023-05-27-15-32.csv      |  13 +++
 logs/TMS_log_2023-05-27-15-33.csv      |   7 ++
 logs/TMS_log_2023-05-27-15-38.csv      |  11 ++
 logs/TMS_log_2023-05-27-15-40.csv      |  35 ++++++
 logs/TMS_log_2023-05-27-15-43.csv      |  39 +++++++
 logs/TMS_log_2023-05-27-15-45.csv      |  29 +++++
 logs/TMS_log_2023-05-27-15-47.csv      |  17 +++
 logs/TMS_log_2023-05-27-15-49.csv      | 139 ++++++++++++++++++++++++
 logs/TMS_log_2023-05-27-15-52.csv      |  19 ++++
 logs/TMS_log_2023-05-27-15-54.csv      |  11 ++
 logs/TMS_log_2023-05-27-15-56.csv      | 143 +++++++++++++++++++++++++
 logs/TMS_log_2023-05-27-16-03.csv      |  93 ++++++++++++++++
 logs/TMS_log_2023-05-27-22-47.csv      |  21 ++++
 23 files changed, 810 insertions(+), 86 deletions(-)
 create mode 100644 logs/TMS_log_2023-05-16-13-41.csv
 create mode 100644 logs/TMS_log_2023-05-25-16-55.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-23.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-25.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-26.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-27.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-30.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-32.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-33.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-38.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-40.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-43.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-45.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-47.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-49.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-52.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-54.csv
 create mode 100644 logs/TMS_log_2023-05-27-15-56.csv
 create mode 100644 logs/TMS_log_2023-05-27-16-03.csv
 create mode 100644 logs/TMS_log_2023-05-27-22-47.csv

diff --git a/EStiMo_GUI_0123.py b/EStiMo_GUI_0123.py
index 43b493b..9af10d4 100644
--- a/EStiMo_GUI_0123.py
+++ b/EStiMo_GUI_0123.py
@@ -35,7 +35,7 @@ from PyQt5.QtCore import QTimer, Qt
 from PyQt5.QtGui import QImage, QPixmap, QIcon, QFont
 from PyQt5.QtWidgets import (QMainWindow, QFileDialog, QMessageBox, QCheckBox, QLineEdit, QWidget, QPushButton,
                              QLabel, QHBoxLayout, QGridLayout, QAction, QApplication, QDialog, QDialogButtonBox,
-                             QVBoxLayout, QFrame)
+                             QVBoxLayout, QFrame, QFormLayout)
 from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
 from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolbar
 from matplotlib.figure import Figure
@@ -419,6 +419,8 @@ class AppForm(QMainWindow):
             self.offline = passed_params['offline']
             self.exp_trig = passed_params['exp_trig']
             self.exp_time = passed_params['exp_time']
+            self.if_percentage = passed_params['percentages']
+            self.received_thr_values = passed_params['thr_values']
         else:
             self.montage_file_path = 'montage_18ch.csv'
             self.time_between_bursts = int(settings_file[settings_file[0]=='time_between_trains'].values[0][1])
@@ -430,6 +432,8 @@ class AppForm(QMainWindow):
             self.num_of_lines = int(settings_file[settings_file[0]=='number_of_lines'].values[0][1])
             self.exp_trig_loaded = int(settings_file[settings_file[0]=='expected_triggers'].values[0][1])
             self.exp_time_loaded = int(settings_file[settings_file[0]=='expected_time'].values[0][1])
+            self.if_percentage = np.ones(12)
+            self.received_thr_values = [10]*12
             self.slow_mode = False
             self.used_features = [0,1,2,3,4,5]
             self.use_notch = True
@@ -524,11 +528,11 @@ class AppForm(QMainWindow):
         self.calibration_counter_max = int(1000/self.speed_general)
         #Lists to keep calibration values for each measurment
         self.f1_cal = []
-        self.f3_cal = []
         self.f2_cal = []
+        self.f3_cal = []
         self.f4_cal = []
-        self.f6_cal = []
         self.f5_cal = []
+        self.f6_cal = []
         self.qmbx = None
         self.red_dots = []
     
@@ -605,13 +609,6 @@ class AppForm(QMainWindow):
         times1 = time.time()
         print("Calculation of features: {}".format(times1-times))
         
-        # #set xlim of plots
-        # self.axesMap[0,0].set_xlim(0.5,self.time_between_bursts-self.breaktime+0.5)
-        # self.axesMap[0,1].set_xlim(0.5,self.time_between_bursts-self.breaktime+0.5)
-        # self.axesMap[1,0].set_xlim(0.5,self.time_between_bursts-self.breaktime+0.5)
-        # self.axesMap[1,1].set_xlim(0.5,self.time_between_bursts-self.breaktime+0.5)
-        # self.axesMap[2,0].set_xlim(0.5,self.time_between_bursts-self.breaktime+0.5)
-        # self.axesMap[2,1].set_xlim(0.5,self.time_between_bursts-self.breaktime+0.5)
         
         #if value is not within threshold values then background color is red (salmon), otherwise green
         
@@ -1027,20 +1024,31 @@ class AppForm(QMainWindow):
             self.f1_cal, self.f2_cal, self.f3_cal, self.f4_cal, self.f5_cal, self.f6_cal = cals
             print(len(self.f1_cal))
             
-            self.thr_1 = [np.min(self.f1_cal)-0.1*(np.max(self.f1_cal) - np.min(self.f1_cal)), 
-                              np.max(self.f1_cal)+0.1*(np.max(self.f1_cal) - np.min(self.f1_cal))]
-            self.thr_2 = [np.min(self.f2_cal)-0.1*0.1*(np.max(self.f2_cal) - np.min(self.f2_cal)), 
-                                  np.max(self.f2_cal)+0.1*0.1*(np.max(self.f2_cal) - np.min(self.f2_cal))]
-            self.thr_3 = [np.min(self.f3_cal)-0.1*0.1*(np.max(self.f3_cal) - np.min(self.f3_cal)), 
-                                  np.max(self.f3_cal)+0.1*0.1*(np.max(self.f3_cal) - np.min(self.f3_cal))]
-            self.thr_4 = [np.min(self.f4_cal)-0.1*0.1*(np.max(self.f4_cal) - np.min(self.f4_cal)), 
-                                  np.max(self.f4_cal)+0.1*0.1*(np.max(self.f4_cal) - np.min(self.f4_cal))]
-            self.thr_5 = [np.min(self.f5_cal)-0.1*0.1*(np.max(self.f5_cal) - np.min(self.f5_cal)), 
-                                  np.max(self.f5_cal)+0.1*0.1*(np.max(self.f5_cal) - np.min(self.f5_cal))]
-            self.thr_6 = [np.min(self.f6_cal)-0.1*0.1*(np.max(self.f6_cal) - np.min(self.f6_cal)), 
-                                  np.max(self.f6_cal)+0.1*0.1*(np.max(self.f6_cal) - np.min(self.f6_cal))]
-            self.thrs = [self.thr_1, self.thr_2, self.thr_3, self.thr_4, self.thr_5, self.thr_6]
+            rThr = self.received_thr_values
             
+            self.thrs = np.zeros([6,2])
+            cals_temp = [self.f1_cal, self.f2_cal, self.f3_cal, self.f4_cal, self.f5_cal, self.f6_cal]
+            print(self.if_percentage)
+            
+            if all(np.array(self.if_percentage) == 0):
+                self.thrs = [[rThr[0], rThr[1]], [rThr[2], rThr[3]], [rThr[4], rThr[5]], 
+                             [rThr[6], rThr[7]], [rThr[8], rThr[9]], [rThr[10], rThr[11]]]
+            else:
+                for idx in range(len(cals_temp)):
+                    cal = cals_temp[idx]
+                    if self.if_percentage[2*idx]:
+                        self.thrs[idx, 0] = np.min(cal)-0.01*rThr[2*idx]*(np.max(cal) - np.min(cal))
+                        print(np.min(cal), np.max(cal), rThr[2*idx])
+                    else:
+                        self.thrs[idx, 0] = rThr[2*idx]
+                    
+                    if self.if_percentage[2*idx+1]:
+                        self.thrs[idx, 1] = np.max(cal)+0.01*rThr[2*idx+1]*(np.max(cal) - np.min(cal))
+                    else:
+                        self.thrs[idx, 1] = rThr[2*idx+1]
+                        print('ddddd', rThr[2*idx+1])
+            self.thr_1, self.thr_2, self.thr_3, self.thr_4, self.thr_5, self.thr_6 = self.thrs
+
             #put axhlines
             for i in range(6):
                 self.axhlines[num_temp] = self.axesMap[i//2,i%2].axhline(self.thrs[i][0], color = 'r')
@@ -1088,35 +1096,12 @@ class AppForm(QMainWindow):
                 for i in range(6):
                     self.axesMap[i//2,i%2].set_ylim(min_zero(np.array(self.thrs[i]) + 
                                                     np.diff(np.array(self.thrs[i]))*np.array([-2,2])))
-                # self.axesMap[0,0].set_ylim(-1,1)
-                # self.axesMap[0,1].set_ylim(min_zero(np.array(self.thr_2) + 
-                #                                     np.diff(np.array(self.thr_2))*np.array([-2,2])))
-                # self.axesMap[1,0].set_ylim(min_zero(np.array(self.thr_1) + 
-                #                                     np.diff(np.array(self.thr_1))*np.array([-2,2])))
-                # self.axesMap[1,1].set_ylim(min_zero(np.array(self.thr_3) + 
-                #                                     np.diff(np.array(self.thr_3))*np.array([-2,2])))
-                # self.axesMap[2,0].set_ylim(min_zero(np.array(self.thr_5) +
-                #                                     np.diff(np.array(self.thr_5))*np.array([-2,2])))
-                # self.axesMap[2,1].set_ylim(min_zero(np.array(self.thr_6) + 
-                #                                     np.diff(np.array(self.thr_6))*np.array([-2,2])))
             else:
                 for i in range(6):
                     self.axesMap[i//2,i%2].set_ylim(self.measures_x_lims[i,0],self.measures_x_lims[i,1])
-                # self.axesMap[0,0].set_ylim(self.measures_x_lims[0,0],self.measures_x_lims[0,1])
-                # self.axesMap[0,1].set_ylim(self.measures_x_lims[1,0],self.measures_x_lims[1,1])
-                # self.axesMap[1,0].set_ylim(self.measures_x_lims[2,0],self.measures_x_lims[2,1])
-                # self.axesMap[1,1].set_ylim(self.measures_x_lims[3,0],self.measures_x_lims[3,1])
-                # self.axesMap[2,0].set_ylim(self.measures_x_lims[4,0],self.measures_x_lims[4,1])
-                # self.axesMap[2,1].set_ylim(self.measures_x_lims[5,0],self.measures_x_lims[5,1])
         else:
             for i in range(6):
                 self.axesMap[i//2,i%2].set_xlim(self.measures_x_lims[i,0],self.measures_x_lims[i,1])
-            # self.axesMap[0,0].set_xlim(self.measures_x_lims[0,0],self.measures_x_lims[0,1])
-            # self.axesMap[0,1].set_xlim(self.measures_x_lims[1,0],self.measures_x_lims[1,1])
-            # self.axesMap[1,0].set_xlim(self.measures_x_lims[2,0],self.measures_x_lims[2,1])
-            # self.axesMap[1,1].set_xlim(self.measures_x_lims[3,0],self.measures_x_lims[3,1])
-            # self.axesMap[2,0].set_xlim(self.measures_x_lims[4,0],self.measures_x_lims[4,1])
-            # self.axesMap[2,1].set_xlim(self.measures_x_lims[5,0],self.measures_x_lims[5,1])
         self.canvasMap.draw()
         
     def calibration_process(self):
@@ -1195,12 +1180,6 @@ class AppForm(QMainWindow):
             for i in range(6):
                 if not all(np.isnan(self.thrs[i])):
                     self.axesMap[i//2,i%2].set_xlim(self.thrs[i][0], self.thrs[i][1])
-            # self.axesMap[0,0].set_xlim(self.thr_1[0], self.thr_1[1])
-            # self.axesMap[0,1].set_xlim(self.thr_2[0], self.thr_2[1])
-            # self.axesMap[1,0].set_xlim(self.thr_3[0], self.thr_3[1])
-            # self.axesMap[1,1].set_xlim(self.thr_4[0], self.thr_4[1])
-            # self.axesMap[2,0].set_xlim(self.thr_5[0], self.thr_5[1])
-            # self.axesMap[2,1].set_xlim(self.thr_6[0], self.thr_6[1])
             
         elif len(self.f4_cal)==1:
             for line_idx in range(len(self.linetemps)):
@@ -1216,22 +1195,10 @@ class AppForm(QMainWindow):
             for i in range(6):
                 if not all(np.isnan(self.thrs[i])):
                     self.axesMap[i//2,i%2].set_xlim(self.measures_x_lims[i,0],self.measures_x_lims[i,1])
-            # self.axesMap[0,0].set_xlim(self.measures_x_lims[0,0],self.measures_x_lims[0,1])
-            # self.axesMap[0,1].set_xlim(self.measures_x_lims[1,0],self.measures_x_lims[1,1])
-            # self.axesMap[1,0].set_xlim(self.measures_x_lims[2,0],self.measures_x_lims[2,1])
-            # self.axesMap[1,1].set_xlim(self.measures_x_lims[3,0],self.measures_x_lims[3,1])
-            # self.axesMap[2,0].set_xlim(self.measures_x_lims[4,0],self.measures_x_lims[4,1])
-            # self.axesMap[2,1].set_xlim(self.measures_x_lims[5,0],self.measures_x_lims[5,1])
         
         for i in range(6):
             if not all(np.isnan(self.thrs[i])):
                 self.axesMap[i//2,i%2].set_ylim(self.measures_y_lims[i,0],self.measures_y_lims[i,1])
-        # self.axesMap[0,0].set_ylim(self.measures_y_lims[0,0],self.measures_y_lims[0,1])
-        # self.axesMap[0,1].set_ylim(self.measures_y_lims[1,0],self.measures_y_lims[1,1])
-        # self.axesMap[1,0].set_ylim(self.measures_y_lims[2,0],self.measures_y_lims[2,1])
-        # self.axesMap[1,1].set_ylim(self.measures_y_lims[3,0],self.measures_y_lims[3,1])
-        # self.axesMap[2,0].set_ylim(self.measures_y_lims[4,0],self.measures_y_lims[4,1])
-        # self.axesMap[2,1].set_ylim(self.measures_y_lims[5,0],self.measures_y_lims[5,1])
         
         # self.linetemps = [self.linetemp1, self.linetemp2, self.linetemp3, self.linetemp4, 
         #                   self.linetemp5, self.linetemp6]
@@ -1296,19 +1263,6 @@ class AppForm(QMainWindow):
             self.axesMap[i//2,i%2].set_title(self.Titles[i], fontsize=9)
             self.axesMap[i//2,i%2].set_ylabel(self.unit_label[i], fontsize=self.labels_size, rotation=270)
             
-        # self.axesMap[0,0].set_title(self.Titles[0], fontsize=9)
-        # self.axesMap[0,1].set_title(self.Titles[1], fontsize=9)
-        # self.axesMap[1,0].set_title(self.Titles[2], fontsize=9)
-        # self.axesMap[1,1].set_title(self.Titles[3], fontsize=9)
-        # self.axesMap[2,0].set_title(self.Titles[4], fontsize=9)
-        # self.axesMap[2,1].set_title(self.Titles[5], fontsize=9)
-        
-        # self.axesMap[0,0].set_ylabel(self.unit_label[0], fontsize=self.labels_size, rotation=270)
-        # self.axesMap[0,1].set_ylabel(self.unit_label[1], fontsize=self.labels_size, rotation=270)
-        # self.axesMap[1,0].set_ylabel(self.unit_label[2], fontsize=self.labels_size, rotation=270)
-        # self.axesMap[1,1].set_ylabel(self.unit_label[3], fontsize=self.labels_size, rotation=270)
-        # self.axesMap[2,0].set_ylabel(self.unit_label[4], fontsize=self.labels_size, rotation=270)
-        # self.axesMap[2,1].set_ylabel(self.unit_label[5], fontsize=self.labels_size, rotation=270)
         
         label_size = 7
         for i in range(3):
@@ -1342,9 +1296,10 @@ class AppForm(QMainWindow):
         
         self.canvas.draw()
         self.canvasMap.draw() #update canvas
+        
         #NOT NEEDED
-        for i in range(self.num_of_ch):
-            self.axbackground = self.canvas.copy_from_bbox(self.axes.bbox)
+        # for i in range(self.num_of_ch):
+        #     self.axbackground = self.canvas.copy_from_bbox(self.axes.bbox)
         
         # texts = []
         # for ind,name in enumerate(self.ch_names):
@@ -1447,7 +1402,7 @@ class Ui(QMainWindow):
         self.main_file.update_plot_lim()
         
 
-    
+
 if __name__ == '__main__':
     app = QApplication(sys.argv)
     form = First_window(AppForm) #AppForm()
diff --git a/FirstWindow.py b/FirstWindow.py
index 73f556b..e84ffd7 100644
--- a/FirstWindow.py
+++ b/FirstWindow.py
@@ -8,7 +8,7 @@ import mne
 import os, sys, traceback, time
 from PyQt5.QtWidgets import (QMainWindow, QFileDialog, QMessageBox, QCheckBox, QLineEdit, QWidget, QPushButton,
                              QLabel, QHBoxLayout, QGridLayout, QAction, QApplication, QDialog, QDialogButtonBox,
-                             QVBoxLayout, QFrame, QTabWidget, QComboBox, QScrollArea)
+                             QVBoxLayout, QFrame, QTabWidget, QComboBox, QScrollArea, QFormLayout)
 from PyQt5.QtCore import QTimer, Qt
 from PyQt5 import QtCore
 from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
@@ -690,6 +690,24 @@ class First_window(QMainWindow):
         self.notch_box = QCheckBox("Notch filter",self)
         self.outliers_box = QCheckBox("Remove outliers",self)
         
+        labels = []
+        self.line_edits = []
+        self.checkboxes = []
+    
+        for i in range(1, 13):
+            label = QLabel(f"Input {i}:")
+            labels.append(label)
+    
+            line_edit = QLineEdit()
+            line_edit.setMaximumWidth(50)
+            line_edit.setText("10")
+            self.line_edits.append(line_edit)
+    
+            checkbox = QCheckBox("%")
+            checkbox.setChecked(True)
+            checkbox.setMaximumWidth(35)
+            self.checkboxes.append(checkbox)
+    
         box_layout = QHBoxLayout()
         box_layout.addWidget(self.box)
         box_layout.addWidget(self.eye_reg_box)
@@ -750,11 +768,13 @@ class First_window(QMainWindow):
         vbox.addWidget(self.file_path)
 
         feature_choice_layout = QVBoxLayout()
+        # feature_choice_layout = QFormLayout()
         text_for_combo = QLabel(self)
         #text_for_combo.setMaximumWidth(370)
         text_for_combo.setWordWrap(True)
         text_for_combo.setText("You can choose up to 6 different measurements that will be "\
-                               "calculated during the intervention.")
+                               "calculated during the intervention. For each of them threshold can be set. If \"%\" option is "\
+                                   "used the threshold will be calculated as the maximum registered value +/- given percent of distance between them.")
         
         connection_settings_text = QLabel(self)
         connection_settings_text.setWordWrap(True)
@@ -767,11 +787,20 @@ class First_window(QMainWindow):
         self.ip_box, self.line_ip, ip_layout = add_thing(self, 'IP: ', self.ip, 100)
         self.port_box, self.line_port, port_layout = add_thing(self, 'Port: ', self.port, 100)
         
-        comboboxes = [text_for_combo, self.combobox1, self.combobox2, self.combobox3, 
+        comboboxes = [self.combobox1, self.combobox2, self.combobox3, 
                       self.combobox4, self.combobox5, self.combobox6]
     
-        for combobox in comboboxes:
-            feature_choice_layout.addWidget(combobox)
+        feature_choice_layout.addWidget(text_for_combo)
+        for idx,combobox in enumerate(comboboxes):
+            vbox_temp = QHBoxLayout()
+            vbox_temp.addWidget(combobox)
+            vbox_temp.addWidget(self.checkboxes[idx*2])
+            vbox_temp.addWidget(self.line_edits[idx*2])
+            vbox_temp.addWidget(self.checkboxes[idx*2+1])
+            vbox_temp.addWidget(self.line_edits[idx*2+1])
+
+            feature_choice_layout.addLayout(vbox_temp)
+            
         feature_choice_layout.addStretch(1)
         feature_choice_layout.addWidget(connection_settings_text)
         feature_choice_layout.addWidget(self.combobox_system)
@@ -795,6 +824,7 @@ class First_window(QMainWindow):
         tabwidget.addTab(self.canvas, 'Select electrodes for features')
         tabwidget.addTab(self.canvas2, 'See the whole cap')
         tabwidget.addTab(self.feature_choice_widget, 'Features and connection')
+        # tabwidget.addTab(self.threshold_widget, 'Thresholds')
         
         #layout.addWidget(self.canvas, 1, 1, 1, 1)
         layout.addLayout(vbox, 1, 0, 1, 1)
@@ -909,7 +939,11 @@ class First_window(QMainWindow):
         
         
         #add EOG and EMG name to make channel names list complete
-        
+        percentages = []
+        values = []
+        for i in range(12):
+            percentages.append(self.checkboxes[i].isChecked())
+            values.append(float(self.line_edits[i].text()))
         
         arr_temp = np.arange(int(self.line_num_ch.text()))
         if self.line_eog_ch.text().strip()=="" and self.line_emg_ch.text().strip()=="":
@@ -951,6 +985,8 @@ class First_window(QMainWindow):
                                 'offline': self.offline,
                                 'exp_trig': int(self.line_exp_trig.text()),
                                 'exp_time': int(self.line_exp_time.text()),
+                                'percentages': percentages,
+                                'thr_values': values
                                 }
         print(self.params_to_pass)
         
diff --git a/__pycache__/FirstWindow.cpython-38.pyc b/__pycache__/FirstWindow.cpython-38.pyc
index b6f9b717eaafc08631a03d4548bb99eeec1f7065..f1c07ac9cfa09674c6a5efa84377db3571e9d5c7 100644
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diff --git a/logs/TMS_log_2023-05-16-13-41.csv b/logs/TMS_log_2023-05-16-13-41.csv
new file mode 100644
index 0000000..d112050
--- /dev/null
+++ b/logs/TMS_log_2023-05-16-13-41.csv
@@ -0,0 +1,17 @@
+time,state,"[1, 5, 0, 0, 0, 0]"
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+          nan]"
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+          nan]"
+64.94280219078064,between bursts,"[991.369968     1.90718841          nan          nan          nan
+          nan]"
+65.42654275894165,between bursts,"[991.369968     1.90718841          nan          nan          nan
+          nan]"
+65.94992423057556,between bursts,"[991.369968     1.90718841          nan          nan          nan
+          nan]"
+66.41601037979126,between bursts,"[991.369968     1.90718841          nan          nan          nan
+          nan]"
+66.94676613807678,between bursts,"[991.369968     1.90718841          nan          nan          nan
+          nan]"
+67.44975781440735,between bursts,"[991.369968     1.90718841          nan          nan          nan
+          nan]"
diff --git a/logs/TMS_log_2023-05-25-16-55.csv b/logs/TMS_log_2023-05-25-16-55.csv
new file mode 100644
index 0000000..e5b2001
--- /dev/null
+++ b/logs/TMS_log_2023-05-25-16-55.csv
@@ -0,0 +1,26 @@
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+41.61506795883179,Calibration,[nan nan nan nan nan nan]
+42.61673665046692,Calibration,[nan nan nan nan nan nan]
diff --git a/logs/TMS_log_2023-05-27-15-23.csv b/logs/TMS_log_2023-05-27-15-23.csv
new file mode 100644
index 0000000..4e5a417
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-23.csv
@@ -0,0 +1,7 @@
+time,state,"[0, 0, 0, 0, 0, 0]"
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+18.131455421447754,Calibration,[nan nan nan nan nan nan]
diff --git a/logs/TMS_log_2023-05-27-15-25.csv b/logs/TMS_log_2023-05-27-15-25.csv
new file mode 100644
index 0000000..ed1f861
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-25.csv
@@ -0,0 +1,67 @@
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+          nan]"
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+           nan]"
+23.18936824798584,Calibration,"[624.5217793   53.53403345          nan          nan          nan
+          nan]"
+24.285281658172607,Calibration,"[674.29178335  50.25160774          nan          nan          nan
+          nan]"
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+          nan]"
+26.143659114837646,Calibration,"[640.46167581 131.33901159          nan          nan          nan
+          nan]"
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+          nan]"
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+          nan]"
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+          nan]"
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+          nan]"
+31.26838183403015,Calibration,"[532.53495161  45.0168438           nan          nan          nan
+          nan]"
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+          nan]"
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+          nan]"
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+          nan]"
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+          nan]"
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+          nan]"
+37.18521499633789,Calibration,"[685.73315151  51.59422961          nan          nan          nan
+          nan]"
+38.079861640930176,Calibration,"[1461.40235144   67.60828094           nan           nan           nan
+           nan]"
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+          nan]"
+43.07574391365051,between bursts,"[901.37484177  64.77141488          nan          nan          nan
+          nan]"
+44.14571142196655,between bursts,"[991.369968    98.69637441          nan          nan          nan
+          nan]"
+45.13783025741577,between bursts,"[1772.19979412  144.977753             nan           nan           nan
+           nan]"
+46.18189096450806,between bursts,"[2044.97291586  128.24543687           nan           nan           nan
+           nan]"
+47.166951179504395,between bursts,"[893.79921876 106.03084768          nan          nan          nan
+          nan]"
+48.173760414123535,between bursts,"[1345.40698533   79.21969115           nan           nan           nan
+           nan]"
+49.1878924369812,between bursts,"[1143.99456588   75.94215315           nan           nan           nan
+           nan]"
+53.14584827423096,between bursts,"[849.28587708  81.93695662          nan          nan          nan
+          nan]"
+54.070730447769165,between bursts,"[1403.32762476  130.85306323           nan           nan           nan
+           nan]"
+55.15762639045715,between bursts,"[2023.09811077   68.6431291            nan           nan           nan
+           nan]"
+56.06561756134033,between bursts,"[627.63545881  59.88836697          nan          nan          nan
+          nan]"
+57.16814184188843,between bursts,"[1249.47862036   60.5790206            nan           nan           nan
+           nan]"
+58.07736134529114,between bursts,"[588.98405701  52.15772357          nan          nan          nan
+          nan]"
+59.07926845550537,between bursts,"[957.02650913  55.7792202           nan          nan          nan
+          nan]"
diff --git a/logs/TMS_log_2023-05-27-15-26.csv b/logs/TMS_log_2023-05-27-15-26.csv
new file mode 100644
index 0000000..1512b47
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-26.csv
@@ -0,0 +1,15 @@
+time,state,"[2, 8, 5, 0, 0, 0]"
+11.62341046333313,Calibration,"[4.37706650e+02 3.46871416e+05 1.51773558e+00            nan
+            nan            nan]"
+12.47609257698059,Calibration,"[1.42189904e+03 5.55817833e+06 2.17276766e+00            nan
+            nan            nan]"
+13.375842094421387,Calibration,"[4.62139039e+02 1.26560076e+06 2.33714688e+00            nan
+            nan            nan]"
+14.378988981246948,Calibration,"[1.41564741e+03 1.18712587e+06 1.10029042e+00            nan
+            nan            nan]"
+15.453124284744263,Calibration,"[8.04832775e+02 6.29262755e+05 1.44203318e+00            nan
+            nan            nan]"
+16.370527267456055,Calibration,"[3.54563261e+02 9.07829436e+04 2.03195361e+00            nan
+            nan            nan]"
+17.378674030303955,Calibration,"[4.91623528e+02 1.19641155e+05 2.07668056e+00            nan
+            nan            nan]"
diff --git a/logs/TMS_log_2023-05-27-15-27.csv b/logs/TMS_log_2023-05-27-15-27.csv
new file mode 100644
index 0000000..736afd7
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-27.csv
@@ -0,0 +1,13 @@
+time,state,"[2, 7, 0, 0, 0, 0]"
+11.957956075668335,Calibration,"[1421.89903726 1020.5298072            nan           nan           nan
+           nan]"
+13.068658590316772,Calibration,"[462.13903898 943.12331986          nan          nan          nan
+          nan]"
+14.074599266052246,Calibration,"[1415.64740525 3207.18292709           nan           nan           nan
+           nan]"
+15.06359601020813,Calibration,"[ 804.83277521 1775.04443206           nan           nan           nan
+           nan]"
+15.967411756515503,Calibration,"[ 354.56326133 1404.31647101           nan           nan           nan
+           nan]"
+17.04812788963318,Calibration,"[ 491.62352785 1410.3022391            nan           nan           nan
+           nan]"
diff --git a/logs/TMS_log_2023-05-27-15-30.csv b/logs/TMS_log_2023-05-27-15-30.csv
new file mode 100644
index 0000000..808c6a7
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-30.csv
@@ -0,0 +1,11 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
+13.924601078033447,Calibration,"[2479.90907109 3201.2754151            nan           nan           nan
+           nan]"
+15.111783266067505,Calibration,"[2178.27829089 1772.08815212           nan           nan           nan
+           nan]"
+15.911534070968628,Calibration,"[ 696.39220507 1403.21232239           nan           nan           nan
+           nan]"
+16.925474643707275,Calibration,"[ 686.45150132 1395.55657168           nan           nan           nan
+           nan]"
+18.025168895721436,Calibration,"[1499.4183051  1198.56120468           nan           nan           nan
+           nan]"
diff --git a/logs/TMS_log_2023-05-27-15-32.csv b/logs/TMS_log_2023-05-27-15-32.csv
new file mode 100644
index 0000000..afbb7d2
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-32.csv
@@ -0,0 +1,13 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
+12.857803344726562,Calibration,"[1094.57813695  943.12331986           nan           nan           nan
+           nan]"
+14.052984237670898,Calibration,"[2504.82054112 3207.18292709           nan           nan           nan
+           nan]"
+15.05912733078003,Calibration,"[2178.60377594 1775.04443206           nan           nan           nan
+           nan]"
+43.74895095825195,between bursts,"[901.37484177 999.01949333          nan          nan          nan
+          nan]"
+44.75762867927551,between bursts,"[ 991.369968   1177.15200136           nan           nan           nan
+           nan]"
+45.74403476715088,between bursts,"[1772.19979412 1420.34399488           nan           nan           nan
+           nan]"
diff --git a/logs/TMS_log_2023-05-27-15-33.csv b/logs/TMS_log_2023-05-27-15-33.csv
new file mode 100644
index 0000000..13021df
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-33.csv
@@ -0,0 +1,7 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
+10.942419052124023,Calibration,"[ 858.00914882 1344.09256824           nan           nan           nan
+           nan]"
+11.958816289901733,Calibration,"[2558.44778034 1020.5298072            nan           nan           nan
+           nan]"
+12.866171598434448,Calibration,"[1094.57813695  943.12331986           nan           nan           nan
+           nan]"
diff --git a/logs/TMS_log_2023-05-27-15-38.csv b/logs/TMS_log_2023-05-27-15-38.csv
new file mode 100644
index 0000000..b48ab3b
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-38.csv
@@ -0,0 +1,11 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
+10.991698265075684,Calibration,"[ 854.95673752 1325.1244443            nan           nan           nan
+           nan]"
+12.206181287765503,Calibration,"[2571.80617715 1020.25921119           nan           nan           nan
+           nan]"
+13.008157968521118,Calibration,"[1084.87727051  946.33142962           nan           nan           nan
+           nan]"
+14.009047031402588,Calibration,"[2479.90907109 3201.2754151            nan           nan           nan
+           nan]"
+14.998743057250977,Calibration,"[2178.27829089 1772.08815212           nan           nan           nan
+           nan]"
diff --git a/logs/TMS_log_2023-05-27-15-40.csv b/logs/TMS_log_2023-05-27-15-40.csv
new file mode 100644
index 0000000..fb16b24
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-40.csv
@@ -0,0 +1,35 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
+11.138729572296143,Calibration,"[ 854.95673752 1325.1244443            nan           nan           nan
+           nan]"
+12.242557764053345,Calibration,"[2571.80617715 1020.25921119           nan           nan           nan
+           nan]"
+13.151295185089111,Calibration,"[1084.87727051  946.33142962           nan           nan           nan
+           nan]"
+14.020914554595947,Calibration,"[2479.90907109 3201.2754151            nan           nan           nan
+           nan]"
+15.031325340270996,Calibration,"[2178.27829089 1772.08815212           nan           nan           nan
+           nan]"
+16.04979133605957,Calibration,"[ 696.39220507 1403.21232239           nan           nan           nan
+           nan]"
+43.20760703086853,between bursts,"[901.37484177 999.01949333          nan          nan          nan
+          nan]"
+44.13486385345459,between bursts,"[ 991.369968   1177.15200136           nan           nan           nan
+           nan]"
+45.14164853096008,between bursts,"[1772.19979412 1420.34399488           nan           nan           nan
+           nan]"
+46.1371967792511,between bursts,"[2044.97291586 1277.6176662            nan           nan           nan
+           nan]"
+47.14643311500549,between bursts,"[ 893.79921876 1184.81029892           nan           nan           nan
+           nan]"
+48.234721422195435,between bursts,"[1345.40698533 1016.23758778           nan           nan           nan
+           nan]"
+49.23674917221069,between bursts,"[1143.99456588  978.86235131           nan           nan           nan
+           nan]"
+53.34631013870239,between bursts,"[849.28587708 837.1660448           nan          nan          nan
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+54.247103691101074,between bursts,"[1403.32762476 1045.29247547           nan           nan           nan
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+55.243021965026855,between bursts,"[2023.09811077 1799.72132666           nan           nan           nan
+           nan]"
+56.14129710197449,between bursts,"[627.63545881 837.71318003          nan          nan          nan
+          nan]"
diff --git a/logs/TMS_log_2023-05-27-15-43.csv b/logs/TMS_log_2023-05-27-15-43.csv
new file mode 100644
index 0000000..d62b515
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-43.csv
@@ -0,0 +1,39 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
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+12.903798341751099,Calibration,"[1084.87727051  946.33142962           nan           nan           nan
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+15.0860595703125,Calibration,"[2178.27829089 1772.08815212           nan           nan           nan
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+16.06592297554016,Calibration,"[ 696.39220507 1403.21232239           nan           nan           nan
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+21.101866006851196,Calibration,"[ 651.27060233 1051.12951388           nan           nan           nan
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+43.19218730926514,between bursts,"[901.37484177 999.01949333          nan          nan          nan
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+46.086899280548096,between bursts,"[2044.97291586 1277.6176662            nan           nan           nan
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diff --git a/logs/TMS_log_2023-05-27-15-45.csv b/logs/TMS_log_2023-05-27-15-45.csv
new file mode 100644
index 0000000..04e89d8
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-45.csv
@@ -0,0 +1,29 @@
+time,state,"[1, 2, 0, 0, 0, 0]"
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+13.993455410003662,Calibration,"[2504.82054112 1415.64740525           nan           nan           nan
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+14.987933158874512,Calibration,"[2178.60377594  804.83277521           nan           nan           nan
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diff --git a/logs/TMS_log_2023-05-27-15-47.csv b/logs/TMS_log_2023-05-27-15-47.csv
new file mode 100644
index 0000000..341c89b
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-47.csv
@@ -0,0 +1,17 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
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+18.96399450302124,Calibration,"[1251.51327195 1964.3581547            nan           nan           nan
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diff --git a/logs/TMS_log_2023-05-27-15-49.csv b/logs/TMS_log_2023-05-27-15-49.csv
new file mode 100644
index 0000000..36bbaac
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-49.csv
@@ -0,0 +1,139 @@
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+           nan]"
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+           nan]"
diff --git a/logs/TMS_log_2023-05-27-15-52.csv b/logs/TMS_log_2023-05-27-15-52.csv
new file mode 100644
index 0000000..4f3dbaf
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-52.csv
@@ -0,0 +1,19 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
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+14.996489524841309,Calibration,"[2178.27829089 1772.08815212           nan           nan           nan
+           nan]"
+15.996524095535278,Calibration,"[ 696.39220507 1403.21232239           nan           nan           nan
+           nan]"
+16.98060631752014,Calibration,"[ 686.45150132 1395.55657168           nan           nan           nan
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+17.984161376953125,Calibration,"[1499.4183051  1198.56120468           nan           nan           nan
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+18.999042749404907,Calibration,"[1251.51327195 1964.3581547            nan           nan           nan
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+20.07875347137451,Calibration,"[ 752.92406383 1679.49931168           nan           nan           nan
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+21.075172424316406,Calibration,"[ 651.27060233 1051.12951388           nan           nan           nan
+           nan]"
+22.074993133544922,Calibration,"[1191.46670203 1851.81659757           nan           nan           nan
+           nan]"
diff --git a/logs/TMS_log_2023-05-27-15-54.csv b/logs/TMS_log_2023-05-27-15-54.csv
new file mode 100644
index 0000000..17e6e77
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-54.csv
@@ -0,0 +1,11 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
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+12.102989673614502,Calibration,"[2558.44778034 1020.5298072            nan           nan           nan
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+12.994574069976807,Calibration,"[1094.57813695  943.12331986           nan           nan           nan
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+13.991585969924927,Calibration,"[2504.82054112 3207.18292709           nan           nan           nan
+           nan]"
+15.011079788208008,Calibration,"[2178.60377594 1775.04443206           nan           nan           nan
+           nan]"
diff --git a/logs/TMS_log_2023-05-27-15-56.csv b/logs/TMS_log_2023-05-27-15-56.csv
new file mode 100644
index 0000000..fd02b6c
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-15-56.csv
@@ -0,0 +1,143 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
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+16.743871927261353,Calibration,"[ 699.795009   1404.33912769           nan           nan           nan
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+17.852146863937378,Calibration,"[ 690.03961583 1403.81217131           nan           nan           nan
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+18.657650470733643,Calibration,"[1465.16763847 1191.07363818           nan           nan           nan
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+19.657780647277832,Calibration,"[1244.42498195 1910.37190906           nan           nan           nan
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+20.642844676971436,Calibration,"[ 765.11176203 1681.1677841            nan           nan           nan
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+           nan]"
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+115.16088533401489,between bursts,"[ 839.83758042 1160.31031671           nan           nan           nan
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+116.0637435913086,between bursts,"[ 522.89688779 1207.78192641           nan           nan           nan
+           nan]"
+117.15123009681702,between bursts,"[ 700.27372496 1017.04443424           nan           nan           nan
+           nan]"
+118.1156837940216,between bursts,"[609.52362638 863.28251834          nan          nan          nan
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+122.15363931655884,between bursts,"[ 970.16293335 1027.99549684           nan           nan           nan
+           nan]"
+123.04068803787231,between bursts,"[ 821.72134383 1053.9258949            nan           nan           nan
+           nan]"
+124.1559145450592,between bursts,"[ 761.74815927 1276.46816096           nan           nan           nan
+           nan]"
+125.15686011314392,between bursts,"[540.22420889 874.41030841          nan          nan          nan
+          nan]"
+126.16659259796143,between bursts,"[692.52196463 876.56597807          nan          nan          nan
+          nan]"
+127.14432764053345,between bursts,"[ 570.44185789 1035.24669037           nan           nan           nan
+           nan]"
+128.1432158946991,between bursts,"[ 562.74743302 1040.91648547           nan           nan           nan
+           nan]"
+132.16099286079407,between bursts,"[1355.11626195 1493.81665944           nan           nan           nan
+           nan]"
diff --git a/logs/TMS_log_2023-05-27-16-03.csv b/logs/TMS_log_2023-05-27-16-03.csv
new file mode 100644
index 0000000..c5af36f
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-16-03.csv
@@ -0,0 +1,93 @@
+time,state,"[1, 7, 0, 0, 0, 0]"
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+12.976935148239136,Calibration,"[1094.57813695  943.12331986           nan           nan           nan
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+13.97525143623352,Calibration,"[2504.82054112 3207.18292709           nan           nan           nan
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+14.983407974243164,Calibration,"[2178.60377594 1775.04443206           nan           nan           nan
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+16.049317121505737,Calibration,"[ 697.55162968 1404.31647101           nan           nan           nan
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+17.077820539474487,Calibration,"[ 687.88507617 1410.3022391            nan           nan           nan
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+18.045377492904663,Calibration,"[1490.59654605 1196.17914022           nan           nan           nan
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+19.046980619430542,Calibration,"[1249.4695525  1958.04092819           nan           nan           nan
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+43.076266050338745,between bursts,"[901.37484177 999.01949333          nan          nan          nan
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+46.17394185066223,between bursts,"[2044.97291586 1277.6176662            nan           nan           nan
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+47.08906364440918,between bursts,"[ 893.79921876 1184.81029892           nan           nan           nan
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+48.183897495269775,between bursts,"[1345.40698533 1016.23758778           nan           nan           nan
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+49.1769483089447,between bursts,"[1143.99456588  978.86235131           nan           nan           nan
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+53.08940529823303,between bursts,"[849.28587708 837.1660448           nan          nan          nan
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+54.152469635009766,between bursts,"[1403.32762476 1045.29247547           nan           nan           nan
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+55.19581365585327,between bursts,"[2023.09811077 1799.72132666           nan           nan           nan
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+56.0966534614563,between bursts,"[627.63545881 837.71318003          nan          nan          nan
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+77.0698082447052,between bursts,"[734.13798272 966.99742467          nan          nan          nan
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+78.09325242042542,between bursts,"[543.10829951 861.66322428          nan          nan          nan
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+79.09425854682922,between bursts,"[1080.54218875 1370.26494042           nan           nan           nan
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+83.08138084411621,between bursts,"[ 902.11798666 1316.42246888           nan           nan           nan
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+83.99285912513733,between bursts,"[1280.56104533 1412.20682967           nan           nan           nan
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+85.09382104873657,between bursts,"[ 728.00428402 1085.06557132           nan           nan           nan
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+86.09383344650269,between bursts,"[1160.38256721 1257.71206113           nan           nan           nan
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+87.0884838104248,between bursts,"[636.82542316 975.80254336          nan          nan          nan
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+88.09388899803162,between bursts,"[684.74299891 840.93531413          nan          nan          nan
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+89.08975481987,between bursts,"[ 667.21552038 1033.72872366           nan           nan           nan
+           nan]"
+92.18130898475647,between bursts,"[1318.94899766 1331.20867887           nan           nan           nan
+           nan]"
+93.18483018875122,between bursts,"[609.19984816 893.63804774          nan          nan          nan
+          nan]"
diff --git a/logs/TMS_log_2023-05-27-22-47.csv b/logs/TMS_log_2023-05-27-22-47.csv
new file mode 100644
index 0000000..7ecbd82
--- /dev/null
+++ b/logs/TMS_log_2023-05-27-22-47.csv
@@ -0,0 +1,21 @@
+time,state,"[12, 8, 0, 0, 0, 0]"
+13.955743312835693,Calibration,"[  42764.37492814 1154392.25235881              nan              nan
+              nan              nan]"
+15.150470495223999,Calibration,"[ 12070.61911485 623218.37394934             nan             nan
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+16.011847019195557,Calibration,"[  849.18313943 89249.87791772            nan            nan
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+16.957338571548462,Calibration,"[   846.18239461 123377.73645655             nan             nan
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+18.107686042785645,Calibration,"[  3961.26619365 422810.86030548             nan             nan
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+19.147690057754517,Calibration,"[ 19383.57379571 490887.29011756             nan             nan
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+21.04951047897339,Calibration,"[  7584.9236247 152489.1627308            nan            nan
+            nan            nan]"
+22.149672269821167,Calibration,"[  3564.88073736 237241.35790604             nan             nan
+             nan             nan]"
+23.126070737838745,Calibration,"[  552.01445685 62491.81636698            nan            nan
+            nan            nan]"